Pan India 90 diverse tea genotypes were mapped against TV1 genome to identify chromosome level InDels. Here we are reporting the high quality biallelic InDels with length >= 20 bp in these 90 diverse genotypes. A total of 14770 InDels were found throughout the 15 chromosomes. Previously, TV1 genome was mapped against CSS genome to identify chromosome level InDels with length >= 20 bp and a total 2366 InDels were found throughout the 15 chromosomes.